rs38004786 SNP Detail

Summary

• ID
  rs38004786
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:70213148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCGAGGC CATTTAGATG
  AGGTACACTT TAATTTAGGA GATGGCAAAA CCAAGAGGCA AAATTTAGGC TAAGACTCCT
  GTCCCCTGAC AAGATGGCCC TCCCTTCTGT CTGGCTATAG TCAGTTCTCC CTGCCAGGCT
  CAAACATTCA TGAGAACTGC TCTTGGTGCC TATGGTTACA GCTGTATTGT AGCGACAGAA
  Y
  CCAAAGCTGT ATGGAAGAGT CAGCATTATC AGATGAGGTG GGGGGGGGGG GGGTCCAGAC
  ACAAAGGCTT GCAGTCATGG AAGGTGTACT CTTAGAGGCC TGGATGGTGT GAGCCCCTCC
  AAAGGGGTGT GTGTGACAGC TACTTATGGT CAGTCAGGGA TACCTGCTTA AGTCTCGAAG
  GTCTAGAGTT TTTATCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52027871	NES15046039	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38004786					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52027871	NES15046039	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:70213148 () rs orientation: forward

Symbol	Name	Function Class
Gm68929	predicted gene, 68929	517 bp upstream
Myo1e	myosin IE	within coordinates
Rr401496	regulatory region 401496	712 bp downstream
Rr682349	regulatory region 682349	528 bp distal
Rr682350	regulatory region 682350	427 bp distal