rs38006638 SNP Detail

Summary

• ID
  rs38006638
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5877609 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAGGGACC ACAGCCAGCC
  CTGCTCACCT GCCGCCCTCA CCGCTGTGGC AGGCCCCCAG CCTCCTGAGC CTCGGAGTGA
  TTTCTATTCT CACTCCTGGC TATGCTACAT TCTTCTGTAG TTACCTCCTG GCTTGTGCCA
  TCACCTTCTG AGGCCTGTTC CAGTGAAAAG CAGGACAGGG CCAGTCACTT TGTTTGTTCA
  Y
  GGGTCTGCTT TGAAACCATG GCCAATAGTT CACTGTTTTC CTTTGCTGGA AACCCCACGT
  GCTTTGCAAA ACACTCACTC CTCAGGGGTT TCAAGTGGCC TCCTCAAACA CGCTTCGCTA
  TCAGCAACCG AGGACCTTGC CTGTAGCCAA AGGGCAGAAG CAGAGCAAGA CTCCAACCGC
  CACCTCCTGT TCCTGCTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50577284	NES13648676	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38006638					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50577284	NES13648676	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5877609 () rs orientation: forward

Symbol	Name	Function Class
Neat1	nuclear paraspeckle assembly transcript 1 (non-protein coding)	within coordinates
Rr359206	regulatory region 359206	792 bp proximal
Tssr157766	transcription start site region 157766	1574 bp upstream
Tssr157767	transcription start site region 157767	835 bp upstream
Tssr157768	transcription start site region 157768	793 bp upstream
Tssr157769	transcription start site region 157769	741 bp upstream
Tssr157770	transcription start site region 157770	652 bp upstream
Tssr157771	transcription start site region 157771	610 bp upstream
Tssr157772	transcription start site region 157772	584 bp downstream
Tssr157773	transcription start site region 157773	715 bp downstream