rs38006742 SNP Detail

Summary

• ID
  rs38006742
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:62315235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTCCTGG AATTCACTCT
  GTAGACCAGG CTGGCCTCGA ACTCAGAAAT CCGACTGCCT CTGCCTCCCA AGTGCTGGGA
  TTAAAGGCGT GGGCCACCAC TGGCCGGAAC TTTGGGTAAT TTACTTACTC ATTTAGAACA
  CATTACCCAT TTCCTCTAAC AAAACAACAG TGAAGCACTT TGTGAAAAAA AAGTAGGTGC
  K
  GTGTTTACTT GAGAAATGGG GCTTAGAAAT GGAACCTACA TGGGCCCTTC GGCCTCCTTC
  AATGACACAT TTTTTTTTAT AGTGCCTCAA AAATATTTCC CCTAAACCCC ACAAATATCA
  ATTAAAGATC TCTTCTGTTC ACACAATTTT CAAAGCACAC CCACTTTGTA TTTTCCAAAA
  CTGGGTGCAT TTTAGGAAGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss50422426	NES13457336	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G		T	G	T		G
ss325649298	CHEV_18_62341818	CHEVERUD	SCREENING_POP	f	SNP								G				T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs38006742					SNP	G	G	G	G	G	G	G	G	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50422426	NES13457336	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:62315235 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10125	CpG island 10125	1544 bp distal
Gm9949	predicted gene 9949	within coordinates
Rr393783	regulatory region 393783	within coordinates
Rr539066	regulatory region 539066	1959 bp distal
Rr539067	regulatory region 539067	1339 bp distal
Rr539068	regulatory region 539068	1543 bp proximal
Rr539069	regulatory region 539069	1703 bp proximal
Tssr151487	transcription start site region 151487	1982 bp downstream
Tssr151488	transcription start site region 151488	762 bp upstream