rs38007096 SNP Detail

Summary

• ID
  rs38007096
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:32985785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTCTCTG TCTTTCTCTG
  TCTGTCTCTC TGTCTTTGTC TCTGTCTCTC TGTCTCTGTC TCTGTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTTTGGG AGGACAGGCA
  AAGGTAATTT TAAGAGCACA ATGGTACAAA AATCTTTAAA TCACTTCTTG CTCTTCTGAA
  Y
  TCCTCCCACT TGGAAAATAA TCAAGGCTTC CAGTATCTTT GGACATGGGA AATTAACTAG
  GAGCAGGAGA ACAGAATATA AGGAGTGTGC CACCCTTCCA GAATTTTCTG CATCTTAAGG
  TCGTGGGATT AGCTCAAAGG GGGAAAGGCA AGCTCACACT GGGGATGTTC TAACCTCCAC
  ATGAGCCTAA AAAGCCATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50970095	NES14418472	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38007096					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50970095	NES14418472	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:32985785 () rs orientation: forward

Symbol	Name	Function Class
4933406C10Rik	RIKEN cDNA 4933406C10 gene	within coordinates
Gm51998	predicted gene, 51998	1086 bp upstream
Rr464834	regulatory region 464834	871 bp proximal