rs38007937 SNP Detail

Summary

• ID
  rs38007937
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79510704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGAGAGC AGGGTAGGTA
  TATTTTGATC TGTTGATGTG GTACAACAAA AAGGTGAATA TGAGTATTTG CCCAGGGAAA
  AGACAGAGTT TACAGTGGGT CTCAGCTTCC TGCTAGAGTA CAAATGGAAT CTGTGCAAGA
  TGCCAGTCCT CTGAAGCTAC AGGGGAGCCA GCTGACTCCA CCTGCATCTT AGCCACACAC
  W
  CAGCTACCGG CCATGGCCAT CCTTGGCTCC ATGCCACAAA TACTCACTGT CTATCTACTC
  TGTACCATGT TGATGCTGGA TGCTGTAAAC AGATTATCTT CAAGGACCTT CTAGTTTACT
  CAGGAAAAAA GGACACGTGA ATACTGTCAC ACTAACTCAG GTACCATGGA TAAAGTATCT
  CCAGGAACCT GCATGTCATC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51725103	NES14567297	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38007937					SNP	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51725103	NES14567297	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79510704 () rs orientation: forward

Symbol	Name	Function Class
Fam227a	family with sequence similarity 227, member A	within coordinates
Rr390973	regulatory region 390973	1089 bp upstream
Rr505687	regulatory region 505687	1640 bp proximal
Rr505688	regulatory region 505688	1834 bp proximal