rs38009635 SNP Detail

Summary

• ID
  rs38009635
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127872818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGTAAAAG ATTGTATCTT
  TGAGATTTAT ATGCGGGTTC CCTAGGCTGC TCTGTGAATA CACCAGCTGC TTGAAAAGCT
  CTTCTGTGGA ATCTACACAT AGGAAACTCG AGTAGGGAAG GGGCTGGGTC CTTCTGGTCT
  GTTGTAACTG GGCGGCTCAG GCAGGCCAAG GAGACCTGAG CTTTGGTGAA GTTCCGGCCA
  R
  CAAGTTAGGT CGAGGTTTTA GATAGCCATG ATTGGCACCG AGCCTTTCAT CACATGTCTG
  GATGACATAC TGCTGCTTAT AAGCATGGCC TACCTAAGCC TGGGTTGGTT AACTCAAAGG
  GGTTGATAAT GCTTGCTAGC ATAGTTCCAT TACATAAGAC TGAAATAAAT TCTTGGGGTT
  TTTCCAACTG AAATAGAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50944823	NES14145742	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A		G	A	A	G		A
ss323531428	CHEV_10_127474005	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38009635					SNP	A	A	A	A	A	A	G	A	A	A	A	G	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50944823	NES14145742	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127872818 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2380	CpG island 2380	495 bp distal
Gm66417	predicted gene, 66417	1368 bp upstream
Naca	nascent polypeptide-associated complex alpha polypeptide	within coordinates
Rr224438	regulatory region 224438	within coordinates
Rr385474	regulatory region 385474	within coordinates
Tssr96290	transcription start site region 96290	1611 bp downstream
Tssr96291	transcription start site region 96291	1594 bp downstream
Tssr96292	transcription start site region 96292	1569 bp downstream
Tssr96293	transcription start site region 96293	1429 bp downstream
Tssr96294	transcription start site region 96294	1355 bp downstream
Tssr96295	transcription start site region 96295	1336 bp downstream
Tssr96296	transcription start site region 96296	1314 bp downstream
Tssr96297	transcription start site region 96297	1294 bp downstream
Tssr96298	transcription start site region 96298	710 bp downstream