rs38009855 SNP Detail

Summary

• ID
  rs38009855
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:188737941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACCCGAGCC AGCAGCATGC
  TGCTCACTGT CTCACCCTTG GGCAGCATGT CCTCTGACTT TCTTCTGGTT CTAAGTAAGA
  GCTTTCGGCA CTTATTCAGT GACTCGGAGC TCCAAGCTGT GCCACAGGTT GTCTTCTAAA
  ACGCTCAAGC CAGGAGTACA TTTATTGTCA TATTTGGTAT TAACTGCTAA CTAGCACCCA
  S
  TAAGAGTCAC ATTCCACAGA TGAAGTGAAA TCCTTGACAG CTCAGCCTTT AAGGCATCCA
  CTTTCTTTCT TCTTATTACT TTCTTATTCA CTCTTGATGC ACAACGAAGT GCACATGTGG
  AGTCAGTGTC CTCCTTTCGT CTTAAGTGGC TTCCAAGGAG GAGCCTCAGG TGGCCAGTCT
  TGCTGTTGGT AAGTGCCGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51419778	NES14449071	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38009855					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51419778	NES14449071	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:188737941 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1193	CpG island 1193	1221 bp proximal
Kctd3	potassium channel tetramerisation domain containing 3	within coordinates
Rr372619	regulatory region 372619	within coordinates
Rr425737	regulatory region 425737	516 bp proximal
Rr425738	regulatory region 425738	1161 bp proximal