rs38010850 SNP Detail

Summary

• ID
  rs38010850
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131673407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCCA CGGAGTCAAC ATTTGCCTTG
  R
  GGACATCCTC CTCCACAACA GAGGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51365804	NES14471142	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G		A	A	G	A		A
ss319975157	CHEV_1_133642246	CHEVERUD	SCREENING_POP	f	SNP								G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38010850					SNP	A	A	A	A	A	A	G	G	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51365804	NES14471142	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131673407 () rs orientation: forward

Symbol	Name	Function Class
Rr24545	regulatory region 24545	1012 bp proximal
Rr28486	regulatory region 28486	606 bp distal
Rr30434	regulatory region 30434	1349 bp proximal
Slc26a9	solute carrier family 26, member 9	within coordinates
Tssr8660	transcription start site region 8660	1640 bp downstream
Tssr8661	transcription start site region 8661	1474 bp downstream