rs38011953 SNP Detail

Summary

• ID
  rs38011953
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:102979658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCAGATGA AGGGTAAGGT
  AGAAACCCAA GAGCCAAAGC CACCAAGAGT CACTCACTGT GACAGCTGCA AAGCTGTCTG
  TCTGCTCTGC AGCTATTGTG TCTGAAAACT AACTGTGAGG GTGAGAAGGG AGACCATTCA
  GAAGGGGTTT TACGCACATC TTTTCTTTCG AGAGCGAGCA TTTTTTCATA TAGAAGAAAC
  K
  CAGCCGCCAT GTCAGAAGGC GATTTCTCAT GACAAACTTA CACATCAGAA GAGCTTATTT
  CCCCAAATTT GAATATCTGA ACTTGCAGGG AGGGACTTAA AAGATATATT CAAACCTGTC
  ATTTATATTA TTTGATCTAC TAAATTTAAG CCCAGGTCAC TTACTAAGTC ATTTTCATTT
  CCAATTGCAA TATTTTACAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51145407	NES14335450	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38011953					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51145407	NES14335450	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:102979658 () rs orientation: forward

Symbol	Name	Function Class
Mast4	microtubule associated serine/threonine kinase family member 4	within coordinates
Tssr123856	transcription start site region 123856	814 bp downstream