rs38012254 SNP Detail

Summary

• ID
  rs38012254
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:10969020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCTGTTGA TATGCAGGCT
  TGAACAAGGG ACCATGAGGT CAACCCTGGA ATTCTGCAGC CAAAGATGCT CCATGTGGAC
  CAGTCATAGG AAGCAGCAGA CAGGCCCAGC TCAGCAGCAT CAATGACCAA GGCTTTGAAA
  AGCCAAAGAG ACAGGAGACC TGACTGCCAA ACACAAGTGA GTCTCTAGAG GCACTTTGTG
  S
  GTAAGCATTC TTGAAGACTG AGGACCAGGT TGTGTCAATG GGTCCATACA ATTCCCTGCC
  TCTGTTGACT GCACTGAAGT TTCCACAGCA CAGTTTTCCT GTTCATGAAG AGTCACAGAG
  CAGAATTCAG GGCTGATGAA CAAGTCATTT ACAAAAAGAA GATGAGGAGG AAGAAAGAAG
  AGGAGGAGGA GGAAGAAAAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51942763	NES14965332	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	G	G	C	C	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38012254					SNP	C	C	C	C	C	C	G	C	C	G	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51942763	NES14965332	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:10969020 () rs orientation: forward

Symbol	Name	Function Class
D8Ertd130e	DNA segment, Chr 8, ERATO Doi 130, expressed	1232 bp proximal
Gm32594	predicted gene, 32594	599 bp downstream
Gm44955	predicted gene 44955	within coordinates