rs38013885 SNP Detail

Summary

• ID
  rs38013885
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:97966529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGGCTGAGA GCAGACAGAG CCGAGGATGG GCTCTGGCTC
  CCCAGGACCA GCTAAACGCC ATTGGGGAAT AGACGGCAGC CTGCCTAGAA CTCCAGTGTT
  Y
  ACAAGGTGGA GATGGAATTC CTGGAGCAAT CTAGCTAGGC AGACTGGGTG TGCGGGTGAC
  TTGTGAGTTC ACCTGGGAGA TCCCACGTCA GGGAGTAAGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51762606	NES14550097	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38013885					SNP	C	C	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51762606	NES14550097	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:97966529 () rs orientation: forward

Symbol	Name	Function Class
Gm25668	predicted gene, 25668	1106 bp upstream
Rr305744	regulatory region 305744	1072 bp proximal
Rr315538	regulatory region 315538	within coordinates
Rr315539	regulatory region 315539	1672 bp proximal
Rr316424	regulatory region 316424	1480 bp distal
Rr370004	regulatory region 370004	931 bp downstream
Senp1	SUMO1/sentrin specific peptidase 1	within coordinates