rs38014909 SNP Detail

Summary

• ID
  rs38014909
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:68470872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTTTGCGCGG AGCAGAGCAG AATGGGTGAG CCAGCTTGTG
  CTTTGAGATT TTTTAATTTT TTTAAGGCAG CTGGATGGTG TGGTTAATGC AACAGTAGAA
  W
  GGGTCTATCT ATACCTCTGA AGTGTAAATG TATTGCAAAT GATTACAATC TGATAGTTCT
  ACCTCATTGC TAATACGATG GCTCTCTGAA TGTGTTTTGT                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50460640	NES13443510	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38014909					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50460640	NES13443510	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:68470872 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10187	CpG island 10187	195 bp distal
Mc5r	melanocortin 5 receptor	within coordinates
Rr393851	regulatory region 393851	611 bp downstream
Tssr151786	transcription start site region 151786	284 bp downstream
Tssr151787	transcription start site region 151787	255 bp downstream