rs38015389 SNP Detail

Summary

• ID
  rs38015389
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:133988423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTTACAA ACTTGCCCAC
  CTATGTCTTC AGAAACCACC TACACTGTCA AAGGAGCCCA GCTGTTTCCC ACAGCTGCAG
  AGTTCCTGAA GTGGGTTGGA GGGTGGCTAA CAACAGTAAG GAGAGAAGTG CTGGCGAGAC
  CACCAATACC CCTGATGTAC AAGACAAGGA AAAGGGCCCG AGAAGGGAGT CTAAGAAGGC
  R
  ATGCCAACTC CGGGGGCACT CTGGACAAAG AGTCTGGAAA GTATTAAAGG TTCTAGATCC
  CAGAGCTTCC AGGTTGCTCA CAAAGGGCAA GGTCAACCAT CTATCACCTT CAAGGAAAGC
  CAGAAACTGT GGAAAAATCC GAAGCTTCAG AGACTTAGCC ACTCGAGCAG CAGGTGGTGA
  AGTGGGGAGG CACCGAAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51373648	NES14471780	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38015389					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51373648	NES14471780	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:133988423 () rs orientation: forward

Symbol	Name	Function Class
Cpgi758	CpG island 758	233 bp proximal
Gm19497	predicted gene, 19497	within coordinates
Gm57140	predicted gene, 57140	363 bp upstream
Rr1740	regulatory region 1740	within coordinates
Rr12446	regulatory region 12446	623 bp distal
Tssr8846	transcription start site region 8846	387 bp upstream
Tssr8847	transcription start site region 8847	410 bp upstream
Tssr8848	transcription start site region 8848	451 bp upstream
Tssr13763	transcription start site region 13763	126 bp downstream
Tssr13764	transcription start site region 13764	177 bp downstream
Tssr13765	transcription start site region 13765	225 bp downstream