rs38015398 SNP Detail

Summary

• ID
  rs38015398
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:24525650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGAACAAGG ACTTAAGCCG
  CAGTTGTATC TGATGGAAGA CGAAAGAGGA CAAACTGGAG ACTGCTGCAG AAAAATGCAG
  CACAATTCAC TACTAGGATA AATATGAAAG TAGAAGGTTT TGATATCAAT AACAACATCC
  AAATTCAGAG CTGGGGACAG AACAATTCAT ATACCATCAA GAGACATTCA ACCCATAGAG
  K
  AAGAATATCT AGAAATAGAA GTGTGAGTTT TGTTGTCCAC AAGTCTGAAG TTCATAAAGA
  CTGCAAGAAA GCCACTCAGT ATTCACTATG TACTATGTAC TAGTCAGAGT TCTAGCAGTG
  AACGCAAAAT AAAGTCTTTG TGAAACCTGG AACAGACATG TCAGTGGAGC GTGGTCTGTT
  AAGTCATCTG GACAACCCCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51254313	NES13801090	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38015398					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51254313	NES13801090	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:24525650 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17202	CpG island 17202	1263 bp proximal
Ndufa5	NADH:ubiquinone oxidoreductase subunit A5	within coordinates
Rr399585	regulatory region 399585	1855 bp upstream
Rr627233	regulatory region 627233	1096 bp proximal
Rr627234	regulatory region 627234	1909 bp proximal
Tssr59987	transcription start site region 59987	1895 bp downstream