rs38016312 SNP Detail

Summary

• ID
  rs38016312
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:61334760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGTTGAA TATTCATACC
  ATAAATAAAA ACCTGCTGCC AGAATCACTG CCCTAAGGAT GCTTAGTTCC TGAGTAAGGT
  AGTATCTGTG TCTATTAGTT ACATCAAGAT TTTTCAGAGA CTCCATGGTG GTATGTAGCA
  GGCATTTGCT TCCACAGCAC TTCTCACAGT GTCTAACCTA AGTTTGTGAA AATGTGAAAA
  W
  TTTTCTTAGT CTCTGTCACA AGCTGAGATT GAATCTTGTA TCTTCTTTGC AGAAGACATA
  TTCCAGCATG ACTGAGAAAA GTGTGTCATT CTCCAAATCT CCCATAGAGA TTCTCCGAAT
  CTCCCATAGA GCGACAGCTA CAATACAAAA CGACCAAAGC AATCAGTGCA TTGAGGCTCT
  GAAATAAACA AGCACAGGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51490011	NES13960086	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	A	A	T	T	T
ss144742957	ENSMUSSNP5062276	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38016312					SNP	T	T	T	T	T	T	A	T	A	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51490011	NES13960086	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:61334760 () rs orientation: forward

Symbol	Name	Function Class
Gm72252	predicted gene, 72252	1191 bp downstream
Mir344d-1	microRNA 344d-1	1820 bp upstream
Mir344d-2	microRNA 344d-2	260 bp downstream