rs38017438 SNP Detail

Summary

• ID
  rs38017438
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:66813258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGCCCTA CACAGGTCAA
  CAGGAAACCA ATGGTATGTC CATTCAGTGG AATATTACAC AGTACTGAAT CTATTATGGT
  GTCCAAAAAA ACATGAGTAG ATTCTAAAAT AATCATGCTA AGGGACAGAA GCCATGGCAA
  AGAGAGGAGT ACAGGAGTCA CTTGATGGAC AAAAAGCAGA GCAGAGGGTG CCTGGGAGGA
  R
  CGAGAAGAGG ATGGCTCACA GTGCAATGAC ATGGAGGAGA AGGGTGAAGG ACATTTCCAT
  CATCTCAGTT GCTGAGATGA CTGGTAGATT TGTTCAAATA TGCAACACAC TGTGCTTCAA
  CAAAAAACAG TTTATCATGA AACCCCACCC CTGGTGAGGA GCTAATGAAG GTGTCTCAAG
  GGGAGGAGGG AGATCAGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51706596	NES14571299	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38017438					SNP	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51706596	NES14571299	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:66813258 () rs orientation: forward

Symbol	Name	Function Class
Ndrg1	N-myc downstream regulated gene 1	Intron
Rr503612	regulatory region 503612	389 bp distal
Tssr134596	transcription start site region 134596	1180 bp upstream
Tssr134597	transcription start site region 134597	1704 bp downstream