rs38018886 SNP Detail

Summary

• ID
  rs38018886
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:12826242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTTTTGA AAACGCGTAT
  TTGTGGGGAG CGGTGGAAGG GAATTGTAGT GACTTAGAGG CATGCACAAT GAGGGAGAGT
  CAAACTTGCC TGCGGTTTAC TGTGTGCAGA GACTGTGAAT CCTGCAGGAA TGACTGAATG
  AACCCTTGAT TCACGGACAT GCCGGAGGAG TTCAACATGG GCACACACGA CTGTCACAGA
  Y
  GGCAGATTCT GGTAAGCTCC GTAAAAGAAG TGAGTCTACA CTAAGCAGTA GCAATCTAGG
  AGTGAGCTTG CGTTCCCAAG GGAAGTCAGT TCTTCACAAG AGGTTAGTGG ATCGGTAGGA
  ATTCACTGGC CAAGTAAGGG AGAGCAGAAG CAAAGACGTT TCCTGTTAGT GCTTGCTATG
  CTAACTGACC TGGAAAGTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
ss51593131	NES14609196	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	WSB/EiJ
rs38018886					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51593131	NES14609196	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:12826242 () rs orientation: forward

Symbol	Name	Function Class
6030458C11Rik	RIKEN cDNA 6030458C11 gene	1507 bp upstream
Cpgi6961	CpG island 6961	800 bp distal
D15Mit199	DNA segment, Chr 15, Massachusetts Institute of Technology 199	460 bp proximal
Drosha	drosha, ribonuclease type III	within coordinates
Rr311575	regulatory region 311575	within coordinates
Rr369910	regulatory region 369910	1251 bp downstream
Rr369911	regulatory region 369911	1015 bp downstream
Tssr130744	transcription start site region 130744	1323 bp downstream
Tssr130745	transcription start site region 130745	1273 bp downstream
Tssr130746	transcription start site region 130746	1249 bp downstream
Tssr133797	transcription start site region 133797	1552 bp upstream
Tssr133798	transcription start site region 133798	1502 bp upstream
Tssr133799	transcription start site region 133799	1481 bp upstream