rs38019109 SNP Detail

Summary

• ID
  rs38019109
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:37526368 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTCTCTT GGATATCTGG
  TGGTCTCTTA GCTACATGCT TTTTATTTCC ATGTAAGACC TAAAAATAGA AAATGTGAGC
  ATTCACTTGT ACAGTTCAAG CCCAGGTTTA AGATGAAAAA CCAAATGTCT CTGTGTTAAA
  AGGGTTAGCT TTAAGCATTT TATCATCTCT GCCTGTCTGC CTGTCTATGA CACTTATCAG
  Y
  GTGGGAACAA GATGCCAGTT GCTGCATGTG ATAGTGACAG TCAGTAAATA TTTGTTGACA
  AATGTTTGTA GAGTAAGTGG GAGGACACTT CTTAATGTCT TCTCTTTATT CTCCAAAGTA
  ATCTATTGAT TAAACTGGTG TACATTTCTG CTGTTTGTTT ATATTTTATT TAGCACTATG
  CAGTTTGAAT CTCTTTGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50794273	NES13548041	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38019109					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50794273	NES13548041	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:37526368 () rs orientation: forward

Symbol	Name	Function Class
Exoc6	exocyst complex component 6	within coordinates
Gm59222	predicted gene, 59222	within coordinates
Rr364833	regulatory region 364833	within coordinates
Rr364834	regulatory region 364834	1434 bp proximal
Tssr156225	transcription start site region 156225	1285 bp downstream
Tssr156226	transcription start site region 156226	1263 bp downstream
Tssr156227	transcription start site region 156227	1098 bp downstream
Tssr156228	transcription start site region 156228	922 bp downstream