rs38019454 SNP Detail

Summary

• ID
  rs38019454
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97807201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTTTTTT AACTTTATGG AAATAAGTGT TCCTTGGTGC
  TTGGGAATTA CGCAAACCAA TGCGCATTTG AAATACCATG TTTACTCCAC AGAATCAAAA
  K
  AGAAACTCTA AAGTGAAAAT TACAGATATG TAAATATTTC TAACTTGGGA CATTGGCTTC
  CTTTGATTTT TATTTTTCCT CTTGTTTAAG ACATCTTCAG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51375315	NES13725676	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38019454					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51375315	NES13725676	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97807201 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	within coordinates
Rr635225	regulatory region 635225	646 bp distal
Tssr57872	transcription start site region 57872	1991 bp downstream
Tssr57873	transcription start site region 57873	1945 bp downstream
Tssr57874	transcription start site region 57874	1928 bp downstream
Tssr57875	transcription start site region 57875	1908 bp downstream
Tssr57876	transcription start site region 57876	1878 bp downstream
Tssr57877	transcription start site region 57877	937 bp downstream
Tssr57878	transcription start site region 57878	924 bp downstream
Tssr57879	transcription start site region 57879	894 bp downstream
Tssr57880	transcription start site region 57880	847 bp downstream
Tssr57881	transcription start site region 57881	664 bp downstream
Tssr57882	transcription start site region 57882	558 bp downstream
Tssr57883	transcription start site region 57883	707 bp upstream
Tssr57884	transcription start site region 57884	1091 bp upstream