rs38023706 SNP Detail

Summary

• ID
  rs38023706
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:51642313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACGGGATT TTTGGAGGGG
  AAATCAGGAA AGAGGATAAC ATTTGAAATT AAAGAAAATA TCTAATAAAA ATAATAATAA
  TTAATAAGAG TTATTTCATT TTAAAATAAA ATTAAAAAAA GAAAAAAGAA AACTTGAGAA
  GCAAGGAGAG GTGTCCTTTC TAGAGGCTAA TATGAACCGA ATGCTTGTAC AAGATGCCAG
  M
  TGTCATACTC AGTCTCAGTT AACACTCACA GAGACTCAGT CGCTGACTTG AACTTGAATT
  TGTCTAACAT CAAAGCCAGG TTTTATATAA CATCACCAAG ATATGCTGCC TTTTTTTTAT
  CCTAATAGTG TACTTTTATT TATATTTCTG CTGTTTATAA AGTGTTTAAA CTCAAGTTGA
  ATTGCATGCA GTTGCCATTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51115396	NES13865338	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	C	C	C	A	A	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38023706					SNP	C	C	C	C	A	C	C	C	C	A	A	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51115396	NES13865338	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:51642313 () rs orientation: forward

Symbol	Name	Function Class
Gm42614	predicted gene 42614	666 bp upstream
Ppargc1a	peroxisome proliferative activated receptor, gamma, coactivator 1 alpha	within coordinates