rs38024843 SNP Detail

Summary

• ID
  rs38024843
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:93732329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAGCCCTGG CTGTCCTGGA
  ACTCACAGAG ATGTTTCTGC CTCTGCTTCC AAAGTGCTAG GATTAAAGAC GTGCACCACC
  ACTGCCAGGC TAAGGTTCTT AATATAGACT TTCACTTAAC CCTCTCATTC TCGGCTCCAC
  ACTCTACTCT CTGGCAGATT TAGTGTCTGA TGGTCCTGTG TTCTCCTGGC AGATTTTATA
  R
  GGTGAATCAG GTCTCTCTTC TACAACAGCA ATTTCTGCCC AACGCTCCGC CATGTCTCTT
  CTATTCTATG TCCCAACCTC TCTCCCTACT CCTCACACAC ACACACCCCT AGTGCATGCT
  TTTCTGACTT CTGGATAAGA AAAGGCCTTA TAGCTCACAG TCCCCAGTAC CCCAAAGCCT
  TGTTCCCATT CTGAGTGTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50904634	NES14161098	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38024843					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50904634	NES14161098	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:93732329 () rs orientation: forward

Symbol	Name	Function Class
4930471D02Rik	RIKEN cDNA 4930471D02 gene	682 bp upstream
Metap2	methionine aminopeptidase 2	within coordinates
Rr437346	regulatory region 437346	423 bp proximal
Rr437347	regulatory region 437347	957 bp proximal
Tssr95291	transcription start site region 95291	689 bp upstream
Tssr95292	transcription start site region 95292	697 bp upstream