rs38025292 SNP Detail

Summary

• ID
  rs38025292
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:113364565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGA GAGACATTGA GAGAGATTCC
  K
  GCTTATGGCC TCTCCCAAAA ACCTG                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50460421	NES14119723	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G		T	G	G	T		G
ss322424325	CHEV_7_120908842	CHEVERUD	SCREENING_POP	f	SNP										G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38025292					SNP	G	G	G	G	G	T	G	G	G	G	T	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50460421	NES14119723	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:113364565 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19594	CpG island 19594	304 bp proximal
Rr653859	regulatory region 653859	242 bp proximal
Spon1	spondin 1, (f-spondin) extracellular matrix protein	670 bp upstream
Tssr68625	transcription start site region 68625	447 bp upstream
Tssr68626	transcription start site region 68626	509 bp upstream
Tssr68627	transcription start site region 68627	578 bp upstream
Tssr68628	transcription start site region 68628	697 bp upstream
Tssr68629	transcription start site region 68629	716 bp upstream
Tssr68630	transcription start site region 68630	755 bp upstream
Tssr68631	transcription start site region 68631	791 bp upstream
Tssr68632	transcription start site region 68632	913 bp upstream