rs38025379 SNP Detail

Summary

• ID
  rs38025379
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:142944853 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGA GGATGGCTGG CTATCGGCCG
  Y
  GAACTTGGTG ACCTTTCCTG TGACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	PWD/PhJ
ss51533826	NES14872371	PERLEGEN	MM_PANEL2	f	SNP		C	T	C	T	C	C		C
ss144594670	ENSMUSSNP6387942	ENSEMBL	ENSEMBL_Sanger	f	SNP	T							T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	PWD/PhJ
rs38025379					SNP	T	C	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51533826	NES14872371	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142944853 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16967	CpG island 16967	891 bp proximal
Fscn1	fascin actin-bundling protein 1	1257 bp upstream
Rr378736	regulatory region 378736	1099 bp upstream
Rr624073	regulatory region 624073	1577 bp distal
Rr624074	regulatory region 624074	755 bp proximal
Tssr49613	transcription start site region 49613	1250 bp upstream
Tssr49614	transcription start site region 49614	1379 bp upstream
Tssr49615	transcription start site region 49615	1860 bp upstream
Tssr49616	transcription start site region 49616	1902 bp upstream