rs38025615 SNP Detail

Summary

• ID
  rs38025615
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:35517129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTGAGTA GAATGTTCCT
  GGAGGTCAGG AAAATCAGGG GCTGAACCTG GGGAGGTGTT GGATGGGAGT AGGACACTCC
  AGTTCCACGA CAGAGGGGAA CGTTAGTTTC CAGGGCTCAC TTTCTAATAA TTCTAAAAAT
  AACTAATAAT AATAATAATA ATAATAATAA TAATAATAAT AATAATAATG TGTTTAGATT
  M
  TCTCTCTCTT ACTATCCCAC TTTAAACTAG TAAAAGAGGA AAAACAAAAA ACCAACCCAC
  TCTCAAAACA TTTTTATTGA GACTTTCATC TATGCATATA GTATGTTTTG AACAAATTCA
  TTCCTGAATC CCTTCTCCAC TTCACCACTA CTTTTCCTTC ACAACTTTAT GTGACCTCTC
  TTCTTAAAAC AAAACCAAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51601161	NES14847480	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38025615					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51601161	NES14847480	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:35517129 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17298	CpG island 17298	130 bp distal
Gm68014	predicted gene, 68014	within coordinates
Mtpn	myotrophin	306 bp upstream
Rr146138	regulatory region 146138	within coordinates
Rr399612	regulatory region 399612	136 bp downstream
Tssr60312	transcription start site region 60312	1911 bp upstream
Tssr60313	transcription start site region 60313	476 bp upstream
Tssr60314	transcription start site region 60314	434 bp upstream
Tssr60315	transcription start site region 60315	371 bp upstream