rs38027236 SNP Detail

Summary

• ID
  rs38027236
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:101204313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTATATTT AGTCAACTAG
  CACTTTGTTG AGTGGTTCAG GGCTCCAGTT ACCTTAATAA CAGGAATCAA CACTCTAAAT
  AGCTGCAAAG AGTGCTTCAG ACACTATAAA TATCTACCCC TATTGGGTAG GTTATTAGAT
  TGGCATTCTG GCTCACAAAT CCTTTACTTC ATACAAAAGA GGTTCCCAGA GTTCAGCTAC
  R
  TCTAGGTGGA ACTGTAAAAT TCATGAAATA GCAGCACTGT GTTCCAGATC TGGGAGCAAG
  CAAGCCCTCC CCCAACACCT CCGGCTAATT AAAGTTATCT GGCCAGTGGC CTGTCATGTA
  GTGCCATACC TATCCTCAAC TGAACTTTGA TCTTGCATTT CCTTAGCTCA TTTGGATTTT
  CTTCCTGCTG GAACAACCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	C3H/HeJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
ss50784759	NES14209261	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G		A	A
ss323149594	CHEV_9_101229444	CHEVERUD	SCREENING_POP	f	SNP					A			G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	C3H/HeJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J
rs38027236					SNP	G	G	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50784759	NES14209261	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101204313 () rs orientation: forward

Symbol	Name	Function Class
Rr198413	regulatory region 198413	1288 bp proximal
Rr202333	regulatory region 202333	1483 bp distal
Rr202334	regulatory region 202334	981 bp distal
Rr206996	regulatory region 206996	within coordinates