rs38034001 SNP Detail

Summary

• ID
  rs38034001
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65844273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTCCTAC ACGATCCGAG
  GGGGCCTGGC ACTAAATGTC ATGTGATGTG TTCTTCGGTG TGAAAAGGCT TCTGGCTGTG
  CGCTTGACTT TAATCTTCCG TTTGGGACAC TTGATTCGAT TGCCTTAACA AAGGAGGTTT
  TTCCCCAGGA GTAAGACGGC TGTCAGGCTT TTCAAGAAAG TTCTTGTGGC AGCAGAAGCT
  S
  TCTGGTGAGG TTTCCTTCAC CTCTATATTT CCATTCATGT TAGGGCCACT GTCTAACATG
  TACATACCAC GCTAATGCCT GGGAACTGAC TTCTGTTAAT CTCTCTCATC CACAGGCTGT
  CGTTGAGTAC TTGCTGTTTA GAGACTCTAG TTAAGGGAAG GGACACAAAG AGGAATGAAG
  AGTTCATCTC TGGTTGGAGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51540572	NES14682626	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C		C	C
ss60417504	NES15922116	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38034001					SNP	C	C	C	C	C	C	G	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51540572	NES14682626	PERLEGEN	MM_PANEL	f	SNP	C/G
ss60417504	NES15922116	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65844273 () rs orientation: forward

Symbol	Name	Function Class
Rr68053	regulatory region 68053	1128 bp proximal
Rr76051	regulatory region 76051	1368 bp distal
Rr76052	regulatory region 76052	214 bp distal
Rr81263	regulatory region 81263	1390 bp proximal