rs38034797 SNP Detail

Summary

• ID
  rs38034797
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:69468155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CGATGACAG ACCTCTATGT TGTTCTTACA
  AAAACTTCCC AAAATGTATC TCTCTCAAAA TAATTTCAGC TTTCTCTGAT TTGTGTTTAT
  CTGATAAACC TCTGTCTTTT CTCAGAAATA TACGACCCAG GGGCCTTACC TTACCTGTCT
  W
  CCTTTCCTTA GCCTAAGGTT GTCCCAGAGC CAGGAAAATG GAGTTTTTAA ACTTTTCTTT
  TGCTGCAGAG TGTCAGCCCT GTGATGACAG ATTGATCCAA GCGCATGATT GCTGAAGCTC
  TGTACTAGGA ATATGCACCC CGCCCCCCAA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51265564	NES14271255	PERLEGEN	MM_PANEL2	f	SNP	T	T	A	T	T	T	T	T	T	T		T	T	T	T		A
ss319781355	CHEV_1_69475570	CHEVERUD	SCREENING_POP	f	SNP											A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38034797					SNP	T	T	A	T	T	T	T	T	T	T	A	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51265564	NES14271255	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:69468155 () rs orientation: forward

Symbol	Name	Function Class
Gm69966	predicted gene, 69966	760 bp downstream