rs38037357 SNP Detail

Summary

• ID
  rs38037357
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60234062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATGCTGGG GTGAGCCTTT
  TGATGATGCA CATGTTTTTG AGTTATTTAT TTTTGAATCC TGTATGTAAC TCTAACAAAG
  CCATTGGTTA ACCTTGATAG GCTTGGGTAA ATCACTTCTT TGGTCTGAGG CCACTGTTCT
  TCCTTGAGTG AATATGTTTG TTCTTGTCTC CCTCTACTGA CCCCACACTG AGGAAGGGCT
  Y
  TGTGCAATGC CATGTTACTA CTCTCTGGCA CATAGCAGGG TTGTTTGCTT TTGTGTTGTT
  GTTTTGAGAT TAGAGTTCAA AAAGTCCAGG CTGGACTTGA ACTCTTGATC TTCCGGCCTC
  TAGGTCCCAA GTGCTGGATT ACAGGAGGTC ATCACCACAC CTGGCTTTTA ATATATTTGC
  TGAATGGAGA TGTAAATGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50866236	NES14170320	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T		C	T	T	C		C
ss323325355	CHEV_10_59861031	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38037357					SNP	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50866236	NES14170320	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60234062 () rs orientation: forward

Symbol	Name	Function Class
Cdh23	cadherin related 23 (otocadherin)	within coordinates
Gm17455	predicted gene, 17455	1581 bp upstream
Rr215449	regulatory region 215449	within coordinates
Rr223077	regulatory region 223077	within coordinates
Rr228097	regulatory region 228097	740 bp proximal
Tssr93633	transcription start site region 93633	1466 bp upstream
Tssr93634	transcription start site region 93634	1519 bp upstream
Tssr93635	transcription start site region 93635	1566 bp upstream