rs38037516 SNP Detail

Summary

• ID
  rs38037516
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:135285745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCAGGCAT GGTGCAGGAG GAGCTGAGAG TTTTACATCT
  TATTCTGAAG TCCACCAGAA GGCTGGGTCC TACATGGTTA GAAGGAGGGT CTCATTGTCT
  R
  CCTCCATAGT GACATACTTC CTCCAACAAG GCCATACCTA CTCCAATAAG GCAATACCTC
  CTAATAGTGC CACTCCCTGG GGCAAGCGTT TTCAAACCAC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	NZW/LacJ
ss51444389	NES14008578	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	NZW/LacJ
rs38037516					SNP	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51444389	NES14008578	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:135285745 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18093	CpG island 18093	1184 bp proximal
Gm36640	predicted gene, 36640	within coordinates
Pbp2	phosphatidylethanolamine binding protein 2	382 bp downstream
Tssr63760	transcription start site region 63760	1602 bp downstream
Tssr63761	transcription start site region 63761	1627 bp downstream