rs38038238 SNP Detail

Summary

• ID
  rs38038238
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46609118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTACACATAA AGTAAAAACA
  AATTTCAAAA ATAATATTGT CACGACTAAC CAAAAACCAA CTGCACAGAA ATAAGACTCT
  TTTTCCTGAC AAGTGTCACT AACAAGATTA TTAAAATGGC TAGTAAGCTA TGCTTAGAAT
  CAAAACACAT CAGTCTTGAC CTACACATAG CAAAATGGCT TTTATTCTTT TGATCCATGT
  Y
  TATATGGTCT TCATAAATCA CCTTATAATA TTACTTACCT TAGAAGAATT CTATGAAGAA
  ATAAGTATAC CACCACATTG AAAAAGCAAT CTTATAGCTC ATTCTCCTTA AGCCACATAA
  TATTTTAAGT GTGCCTTGTA TTTCTGCTTA ATGAACTATC TTTTTCATTC TAATATCTCC
  TCAAAGTCTT TGTGCAGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51891865	NES14911525	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38038238					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51891865	NES14911525	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46609118 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19131	CpG island 19131	693 bp distal
Gm39012	predicted gene, 39012	within coordinates
Rr646810	regulatory region 646810	1465 bp distal
Rr646811	regulatory region 646811	854 bp distal
Rr646812	regulatory region 646812	821 bp distal
Rr646813	regulatory region 646813	810 bp distal
Rr646814	regulatory region 646814	177 bp distal
Rr646815	regulatory region 646815	1460 bp proximal
Tssr72574	transcription start site region 72574	896 bp upstream
Tssr72575	transcription start site region 72575	890 bp upstream
Uevld	UEV and lactate/malate dehyrogenase domains	843 bp upstream