rs38038427 SNP Detail

Summary

• ID
  rs38038427
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:83079597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATATGTG AGCCAAAGAA
  ACCCTTTCCT CTAAGAGTTT CTTTTGTTCA TGATGTTTCA TCCCAGAAAA AATAACCATA
  ACTAAGACAC CAAGCAATCT GTTCCCAGAC CAAATGAAAG ATTGCTAAGA ATTATGCTAT
  CCTTTAAAAA CGTTTCGGCT CCTTTTTGTA GAAGTTAATC AAACAGGCCA ACTGCCAAGA
  M
  AAACTGAAAG GAATAAAATG TTTCATGACT CATTTTATAG AAGAATTTAA AGCATCAATA
  CAAAACTGTT TGAAGGAAGA AAAGTAAGGA GGGAGGGAGT AGGAGAGAGT AAGAAAGGAA
  GGTAAGCAGA GAGAGAGGGA AGGAAGGAAA AAGGAAGGGA AGGAGGGAGA GCAGAGAGTA
  AGAGAGGAAG GAAGGTAGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss51971198	NES14983424	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	A	C		A	C	C	A		C
ss145303241	ENSMUSSNP1326507	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss322735741	CHEV_8_84876867	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38038427					SNP	C	C	C	C	C	C	C	C	A	C	C	A	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51971198	NES14983424	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:83079597 () rs orientation: forward

Symbol	Name	Function Class
Il15	interleukin 15	within coordinates
Rr400995	regulatory region 400995	1416 bp downstream
Rr666114	regulatory region 666114	1316 bp distal
Rr666115	regulatory region 666115	1523 bp distal
Tssr81943	transcription start site region 81943	440 bp downstream
Tssr81944	transcription start site region 81944	484 bp downstream
Tssr81945	transcription start site region 81945	527 bp downstream
Tssr81946	transcription start site region 81946	582 bp downstream
Tssr81947	transcription start site region 81947	1365 bp downstream