rs38040311 SNP Detail

Summary

• ID
  rs38040311
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:15778738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTCCTGGTA CAGCCCACCA GCAGGTCAGC CAGACGACAC
  AGGGCTGGAC TCTCTTTCCC AAGCTAATTC ATCTACACCG GTAGCACTTT AAAAATCAAC
  Y
  CAGAGACCGG TCTTGCAGCA GATGCTTTTT CCGCCTGCAG AAGATGAATG TGAAGAACCA
  CAGCTCCCTT GTTCTCTCAG GGTCGGGGCC AGCTCAGCCC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss50640796	NES13617959	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	CAST/EiJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs38040311					SNP	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50640796	NES13617959	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:15778738 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10648	CpG island 10648	674 bp proximal
Gm50348	predicted gene, 50348	1684 bp upstream
Gm54054	predicted gene, 54054	within coordinates
Rr406864	regulatory region 406864	within coordinates
Rr544631	regulatory region 544631	within coordinates
Rr544632	regulatory region 544632	663 bp proximal
Rr544633	regulatory region 544633	1073 bp proximal
Rr544634	regulatory region 544634	1695 bp proximal