rs38042344 SNP Detail

Summary

• ID
  rs38042344
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:103017511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGGGGCC TGGGGTCAGG
  GCAGACCTGG ACTTGGGTGG TAGAGGGTGA AGAAAGGGTA GGCCGCCACC TCCTCCGTGG
  CAGCCTGGGG ACTGACGAGT GTGGCCCCCT AGAGCTCACA TCAGCACCTT GGCTTGGGCT
  CTTTCTCCTG GGGTCTGCTT CTCTGCTTTC TGTGGTTTCT ATGAGCCAGC CTTTCAAGTG
  Y
  GCGTGTTTAG AAGACCCTAG CCATAGGCTG GTCTTACGGC TGAACCTCTC TCTCCTTTCT
  GCCTTGCAGT CGGGAAGACG TCTCTGATCA CGAGGTTCAT GTATGACAGC TTCGACAACA
  CCTACCAGGT AAGACTCCCC ACTTCCCATG CTCCCCCCCC CCACCTCCCC TGCCTCTGTC
  TCTGCCTGTG GACCCTGTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss52038089	NES15054357	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs38042344					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52038089	NES15054357	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103017511 () rs orientation: forward

Symbol	Name	Function Class
Rab6b	RAB6B, member RAS oncogene family	within coordinates
Rr207085	regulatory region 207085	1912 bp distal
Rr207086	regulatory region 207086	491 bp proximal