rs38045355 SNP Detail

Summary

• ID
  rs38045355
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131314146 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCTGCAG ATGAGGCTGG
  ACCGTTAGAG GCTCCAGTGT TCTGCCGTTG TTACTGCACT CTGTCAGTCC ACCAGCAGAG
  CTGGCAGAGC CCTGAGTCTC AGAACCACTC CTTGATGCTT TCTGCGTGGC ACTCTGGGTG
  TGGCCTGGGA GAGGCAGCTG CATGTGATTG CCAGCTTGGA ACCTAGCTGA TCACTAATAT
  S
  CACTAAGAGC CTGCAGCCTC TGTCCTTGGT GATGATAGAG GAGTGGAGGC AGGACAGCCA
  TGAGCCCAGC AGTCATCTTG TTGTGTAGAG TTCTGAGTGT GGATAGTGTC CTGCCTTACC
  ATTTGGGAGT TTCATAGCTC ATTTTCCTCC ATGAGGCTCC GTGACCGTTG ATGAGAGCAC
  TTATGGGACC GAATCTCCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51640880	NES14656457	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38045355					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51640880	NES14656457	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131314146 () rs orientation: forward

Symbol	Name	Function Class
Papss1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	within coordinates
Rr74408	regulatory region 74408	within coordinates
Rr74409	regulatory region 74409	908 bp proximal