rs38047857 SNP Detail

Summary

• ID
  rs38047857
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:80598036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCATGCCTG GCTTACCCTG
  AAAAGCCCTT GCCTCTCCAG GAGCGTGACC CTGGCAGGGC CCAACAGGAC TAACCTTTGG
  GTCCTCCGTT GTCTCTAAAT AGAGGAACTC GGGGACACTG TAGAAACGCA TGAACTGAAA
  GTGGTGCTTG TCACTTGGAG TGGTCTCTCT GACTGTGGAA GTGAACATAG CTCCTTATGA
  Y
  ACTGTTAGAA AATCAGTGTT TGCAAAGGTT GCTAAAGAAA CACAAGGAGT GTCGAATCTG
  AAATAGCCCG TCTAGACTCA CTCCCACTGT CTGACCTTTG ATGTATTTCC TAATCCACCA
  ACCTCGCCAG CAAATTGGTG AGTAAGCAAC GACTCACTTT ACACGCTGTC ATGAGGCTGA
  CGAGGCCCAG GTCACTGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50521914	NES13678045	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38047857					SNP	C	C	T	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50521914	NES13678045	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:80598036 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10304	CpG island 10304	72 bp proximal
Gm54039	predicted gene, 54039	within coordinates
Tssr152111	transcription start site region 152111	369 bp upstream
Tssr152112	transcription start site region 152112	406 bp upstream
Tssr154031	transcription start site region 154031	24 bp upstream