rs38048343 SNP Detail

Summary

• ID
  rs38048343
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134805879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATATTAAT TCTAATCTCA
  AAAAAGGGAG TGCTGCCGAG ATGGCTGAGT TCGTTTCCCC AGCATCCACG TACAAAGCTG
  TGCCCGGCCC ATCTGTAATC CTAGTGCCCA AGGAGCCGAG ATAGGTGGAT AGCTTTAGAG
  AGCTCACTTA GCTAGATAGC CCTGTGACCC TGGGTCAAAG TGTGGATCAA GATGGGAAAG
  R
  ACCGACATAA ACACAACTAG AATACAAATG TAACCACAGA TCCTGTATAT TTACTACTCA
  TTCCTGGAAC ACTGCCTCAG TTGGACTTCG GAAAGGGTAC TTTCAATGTG TTTGTGAAGT
  ATGGGCTCAA GGCTTTACAT TAGTTAACAG ATAAAAATCA CAATCATAGC CCAAGGGTGG
  CTGACAACAG GAGTTAACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51438873	NES14009638	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38048343					SNP	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51438873	NES14009638	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134805879 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18077	CpG island 18077	1013 bp proximal
Crebl2	cAMP responsive element binding protein-like 2	1238 bp upstream
Gm67917	predicted gene, 67917	25 bp downstream
Rr368197	regulatory region 368197	969 bp upstream
Rr639726	regulatory region 639726	174 bp distal
Rr639727	regulatory region 639727	390 bp distal
Rr639728	regulatory region 639728	130 bp proximal
Rr639729	regulatory region 639729	1169 bp proximal
Rr639730	regulatory region 639730	1350 bp proximal
Rr639731	regulatory region 639731	1545 bp proximal
Tssr59250	transcription start site region 59250	1229 bp upstream
Tssr59251	transcription start site region 59251	1300 bp upstream
Tssr59252	transcription start site region 59252	1403 bp upstream
Tssr59253	transcription start site region 59253	1848 bp upstream