rs38048605 SNP Detail

Summary

• ID
  rs38048605
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124717386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTCGGCGCC GGAAATCGAG
  TGCGCCTTGG CCCGTGGGCG GCGCTTCACG GAGGCGTAGG GAAGCAATGG CCGCTGACGG
  TGAGGGTGGC ATGGATCGAA ACGCGGAGCC GGGCGGGAGG GATACTTTTG GTCTTTAGAG
  GCACAGCCAG TGTATTCATT CATTCGTTTA TTCATTCACT CAGCAATTTG GTTTTTGAGG
  R
  CGGTTCTCAC GGAGAACTCG CTGTGATGCC TTGAGCCCTT CATCCTCCAG TCTTCTTTAG
  ATTGCTGGAA TTACGGACGT GCACGATCAA GCTGGATTTT TCTGTGGTGC TCAGATATTT
  GTTCATGCTC AGTAGGCATT CTACCAATTG AGCTTCCTCC CCAGCCCTAA TTTTTAGGCA
  GATGCTCTCT CCTTCCTTAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51196583	NES13821428	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38048605					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51196583	NES13821428	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124717386 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16619	CpG island 16619	within coordinates
Eif2b1	eukaryotic translation initiation factor 2B, subunit alpha	192 bp upstream
Gtf2h3	general transcription factor IIH, polypeptide 3	within coordinates
Rr399368	regulatory region 399368	46 bp downstream
Rr620506	regulatory region 620506	203 bp distal
Rr620507	regulatory region 620507	173 bp distal
Rr620508	regulatory region 620508	within coordinates
Tssr48907	transcription start site region 48907	199 bp downstream
Tssr48908	transcription start site region 48908	139 bp downstream
Tssr53375	transcription start site region 53375	279 bp upstream
Tssr53376	transcription start site region 53376	248 bp upstream
Tssr53377	transcription start site region 53377	228 bp upstream