rs38048966 SNP Detail

Summary

• ID
  rs38048966
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:55240488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGAGTGA GCAGGTAACT
  TCTACCTTTG CACCTCTATC GAAACAGGTC CAAAGGTTCC AGAGCAGCTG GCAGGACACT
  CAGAGCAAGA TCCGGTGGCT TCAGGTGCGC CTCGTCCTGG AGCGTGGAAA GGCAGAGGCA
  GCTTCATGTG GTGCTGAACA GAGAGAGCTA GCTGCAAGAG AAGCCATTCC TCAACCTAGC
  Y
  GCTGTGACCA TTCTCAAGAG GTAAGCTGCC TTCTCTGGCC TATGGGCTAG AGGGAGTAGA
  TAGATATGGC GGGGGAGAAA GTGAGTGTGT ATTCATCTGT AACCTGACTA AAGCTCTTTC
  ATAACAGGGG TGATAATCTC TCAGCTCACT TGTGTGGGAG GCAAAGAAAG ATGTCAATTT
  GAAAGGAAAA CATTTGAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51221527	NES14297445	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38048966					SNP	T	T	T	T	C	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51221527	NES14297445	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:55240488 () rs orientation: forward

Symbol	Name	Function Class
Acsl5	acyl-CoA synthetase long-chain family member 5	within coordinates
Cpgi11077	CpG island 11077	1959 bp proximal
Rr370538	regulatory region 370538	1828 bp upstream
Tssr5558	transcription start site region 5558	213 bp downstream
Tssr157068	transcription start site region 157068	153 bp downstream
Tssr157069	transcription start site region 157069	112 bp downstream
Tssr157070	transcription start site region 157070	93 bp downstream
Tssr157071	transcription start site region 157071	1585 bp upstream
Tssr157072	transcription start site region 157072	1637 bp upstream
Tssr157073	transcription start site region 157073	1844 bp upstream
Tssr157074	transcription start site region 157074	1910 bp upstream
Tssr157075	transcription start site region 157075	1925 bp upstream