rs38049782 SNP Detail

Summary

• ID
  rs38049782
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:81873612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGCTCCA TTCTAGAACA
  TAGGTTCTTT TTGGTTTTTC ATTTAGACTT ACAGAACTCA GTCTCTTGAG ATCATAATAG
  TAATAAATCA TAAATCATAA TAAACCTCCC TCTCTATTCG TCCCCCCCCA AAGACAAGGA
  CTCTCCCCAG CCCCACGTGT GTCCTCCCAG ACAGACACAC GCACATCAGT CATATCACAC
  Y
  GAGTTTCTTA TCAGTACATC AGTCACGACA CGCCAAGTTT CTTATCAGTC TTTCTCAGGC
  ACAGTTCTGA CAAAGAAGGA AATACTGTTT GGTTCTGTGC CCGATCCAAA CGTTAAGGTT
  AGCAGCACCC CTGGGTGAAG CATCTGACTA GGTGACAGTG GTGCCATGTC CCTAGCTCTG
  ACAAACCTGA GTCTCTTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51348639	NES13742436	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38049782					SNP	T	T	T	T	T	T	C	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51348639	NES13742436	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:81873612 () rs orientation: forward

Symbol	Name	Function Class
1700097M23Rik	RIKEN cDNA 1700097M23 gene	1292 bp upstream
Mir468	microRNA 468	within coordinates
Mir7232	microRNA 7232	968 bp upstream