rs38051377 SNP Detail

Summary

• ID
  rs38051377
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17103178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACTAGATTT ATTTTACATA TATATAAAAA ATATTCTATT
  TAGAAATCAG AGAAATACTG AGAGGGTTTG AAACATGAGG ATACCAGGGT CAGGAGGTCT
  Y
  TTCTGACATT TATTTTTAAT TAATTAATTA ATTAATTTTG GTTTTTCGAG ACAGGATTTC
  TCTGTGTAGC CCTGGCTGTT CTGGAACTCA CTTTGTAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50627364	NES13609112	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	T		C	C	C	C	C
ss146100411	ENSMUSSNP1728038	ENSEMBL	ENSEMBL_Sanger	f	SNP	C						T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38051377					SNP	C	C	C	T	C	T	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50627364	NES13609112	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17103178 () rs orientation: forward

Symbol	Name	Function Class
Prune2	prune homolog 2	within coordinates
Tssr155419	transcription start site region 155419	144 bp downstream
Tssr158489	transcription start site region 158489	335 bp upstream
Tssr158490	transcription start site region 158490	272 bp upstream
Tssr158491	transcription start site region 158491	216 bp upstream