rs38052194 SNP Detail

Summary

• ID
  rs38052194
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131671157 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGTCATTGG CTCTGGTTCC TGGAAGGGAT
  GGTACAGAGA GTTGATGGCT TCCAGAACAC CTTTCCTAAA TTTGCTGTAG GTCCAGTTTC
  TTAAGCTTCT TTACTCTAGT GTTTCTGAGC CTCATGGCAT CTCTGATATT TCTGAGCACT
  R
  CACAGGGACG GTCTTCACAA TGATTTAAGG TCGGGGATGG AGCTGGAAAG CAAGTCTCCA
  CCTCAGCTCC GAGTATTTCA AGGCCCTCAG GGCCTCCAGA CACCATTCAT GCCCTTTCCC
  AGGGTGCTCA GAGGTCCACT GTCCCTCACC                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss51365842	NES14471117	PERLEGEN	MM_PANEL2	f	SNP		G	A	G	A	G	A	A	G		A	G		A
ss145481785	ENSMUSSNP5528367	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss319975134	CHEV_1_133639996	CHEVERUD	SCREENING_POP	f	SNP										G			A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs38052194					SNP	A	G	A	G	A	G	A	A	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51365842	NES14471117	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131671157 () rs orientation: forward

Symbol	Name	Function Class
Rr19210	regulatory region 19210	1957 bp distal
Rr28486	regulatory region 28486	643 bp proximal
Slc26a9	solute carrier family 26, member 9	603 bp upstream
Tssr8660	transcription start site region 8660	592 bp upstream
Tssr8661	transcription start site region 8661	759 bp upstream