rs38053365 SNP Detail

Summary

• ID
  rs38053365
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:117232965 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACAGAACT GCAGGACCCG
  GCTCAGGCAG GCAGAGAGGC TCAAGGGTAC TGCTGACGGT TTCCCCACAT AGTGCTGACA
  CCCCATCCCC CACCCCAGGA GACAGGATCG CACTGCACTT CCCGGTCAGG CTTTTTATCA
  AGTCTGTTAT ACTTTCAACA CTTCTCAGAG CCATTTGCTC TCGTGCTCGG GGAAGAGATC
  R
  GACGCCTACC TCGTTGGCTC CCACTGAGCT GATCACACAG CTCAGCTTCT GGTTGTCCTT
  AGATTCCAGG TAGATGGCCT GGCTCTTGTG GTACCTGCCA AAACCAGGAC ACAAACAAAA
  TATCAGGACG GAGGGAGGGG CAGGAAAACA AACACCACAG TGACAGAAAC CATCACTTCA
  ACAGTCACAG CAACACACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51186324	NES13827117	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs38053365					SNP	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51186324	NES13827117	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:117232965 () rs orientation: forward

Symbol	Name	Function Class
Rr618554	regulatory region 618554	139 bp distal
Rr618555	regulatory region 618555	276 bp distal
Rr618556	regulatory region 618556	1497 bp proximal
Rr618557	regulatory region 618557	1862 bp proximal
Rr618558	regulatory region 618558	1967 bp proximal
Suds3	suppressor of defective silencing 3 homolog (S. cerevisiae)	Intron