rs38055634 SNP Detail

Summary

• ID
  rs38055634
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:127497742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGAACTCTG TAGGAAAGAG GTGTAGGTTG GTTAGAACAC
  TGGGTTGGAG GCTGAGCAGA AGCGTTGTTA TGAGGCCAGG CACAGAAAAA TGCGAAGACA
  R
  CTCCATTTAT TGAATTACTG CCTCCTGCCC ACTGCATGTG TATGGGGGTT CCGTACCCAA
  GCGTATGCAG CTCCCCCTCC TAGTTTGGTT GTGTGTAGCT                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50947353	NES14151035	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38055634					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50947353	NES14151035	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:127497742 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2370	CpG island 2370	832 bp proximal
Gm16229	predicted gene 16229	1966 bp upstream
Nab2	Ngfi-A binding protein 2	within coordinates
Rr224427	regulatory region 224427	within coordinates
Rr402332	regulatory region 402332	188 bp upstream
Stat6	signal transducer and activator of transcription 6	916 bp downstream
Tssr99809	transcription start site region 99809	449 bp upstream
Tssr99810	transcription start site region 99810	415 bp upstream
Tssr99811	transcription start site region 99811	206 bp upstream
Tssr99812	transcription start site region 99812	1597 bp downstream