rs38058012 SNP Detail

Summary

• ID
  rs38058012
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82986492 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGGCCCCT GAAAAGAGCC
  TGCTCTTCCG CTAGGAGCAT CCCACAGTGA AGCTAGTGGG TCCTAGTGGG TCTCCTGCAG
  GGGTCGTGTG GGGGTCAGGG TGGGGCTGCT GCAGGTCTTT GGAGGGAGTC CCAAGCCCCA
  GGGCACAGGG ATAAAGGACA GAGTAAGGCT GGGCTGTGCA AACCTCCTTT CTGCCTTTGT
  S
  TTTTCAGCCT TTAAGTGGAA TCAGTTCACC CTCCTGGGCC ACAGTTTTGG TGAGTCAGCC
  TAAGGCGGAA CCTGAGTTCG GGGGGAGAGC TGTAGGAAAG AGAGAACTTG ACACTGTGGT
  ACCTGGTGCC TTTCCCTGCC CCTCTGAGGA GAGGGGTGAG AGAGTCATCT AATGCTTACC
  GTACAGTTCT AGAGACCGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51727773	NES14564601	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38058012					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51727773	NES14564601	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82986492 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7437	CpG island 7437	1800 bp distal
Gm17206	predicted gene 17206	within coordinates
Rr404540	regulatory region 404540	1971 bp downstream
Serhl	serine hydrolase-like	within coordinates
Tssr132409	transcription start site region 132409	1988 bp downstream
Tssr132410	transcription start site region 132410	1973 bp downstream