rs38058039 SNP Detail

Summary

• ID
  rs38058039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:3491340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAACAAGCT GCTGAGTAAT TAGCGTAATG CCATCCTCTG
  CTCAAATTGC TCTGCTAATG AGCCTGACTG ACAACAGCAG CATTAGCCGT TAGTCACGGG
  Y
  CTCTGACGGC CCCCAGGCTC TGTGGTTTCC TGGGGGGACA GAAACACATC TGTTTGCCTC
  TGTGGTTGCT GGCCCTCAGG TGAGGGAACC CAGAGCTATG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50589668	NES13657881	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs38058039					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50589668	NES13657881	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:3491340 () rs orientation: forward

Symbol	Name	Function Class
Rr364729	regulatory region 364729	within coordinates
Rr542416	regulatory region 542416	within coordinates
Tssr157389	transcription start site region 157389	433 bp upstream
Tssr157390	transcription start site region 157390	64 bp upstream
Tssr157391	transcription start site region 157391	36 bp upstream