rs38058145 SNP Detail

Summary

• ID
  rs38058145
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5122697 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAA GCCACGCCTC TTAATAATAC
  Y
  TTTAAATCGG ATCCACCCAA GGAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50580612	NES13651957	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	C	T	C	C	T	T		C	T	C	C		C
ss146009910	ENSMUSSNP5713183	ENSEMBL	ENSEMBL_Sanger	f	SNP		T
ss325716477	CHEV_19_5072669	CHEVERUD	SCREENING_POP	f	SNP											T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs38058145					SNP	C	T	T	T	C	T	C	C	T	T	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50580612	NES13651957	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5122697 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10429	CpG island 10429	901 bp distal
Cpgi10430	CpG island 10430	252 bp distal
Gm46658	predicted gene, 46658	within coordinates
Rr405800	regulatory region 405800	371 bp downstream
Rr405801	regulatory region 405801	567 bp upstream
Rr542921	regulatory region 542921	430 bp distal
Rr542922	regulatory region 542922	within coordinates
Rr542923	regulatory region 542923	652 bp proximal
Tmem151a	transmembrane protein 151A	within coordinates
Tssr157540	transcription start site region 157540	579 bp upstream
Tssr157541	transcription start site region 157541	540 bp upstream
Tssr157542	transcription start site region 157542	146 bp upstream