rs38058700 SNP Detail

Summary

• ID
  rs38058700
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68599751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTATCTGC TGGGAAGTTT
  ATGGTATCTG GCAGGAACCG TAGAGGGTTT CAAGACTTCT AAATATAATC TAAAGGAAAC
  TGTGTCTCTA GAGAAAGGAA GAATGGTAAT AAATTGTAAC GGCATCGGTT TAGGCTGTGT
  CTACACAGAG GAAAGTGGGG ACTTGCAATG TCCCTCCCAG CCTGCCTGCC TGTGTGACAC
  W
  GTGTCAGGTG CTCCCTGCTT CTGCTTCAGG GCAGGTGGAA CAGGGAGACA GTCTCTAGGT
  ACACTCTCTG TGCTTCACAA GCCATAGAGA TGAATTAGAT TGTCTCTCCC CCTGCTCACC
  AGTGTCCAGC ACTGTGATGC AGTCCCTTGT CGGATGGACA CATGTCAGGG AGGACTCAGA
  CATCAGATAG CAAGCAGGTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51541952	NES14683684	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38058700					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51541952	NES14683684	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68599751 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13252	CpG island 13252	968 bp distal
Gm66274	predicted gene, 66274	1549 bp upstream
Il12a	interleukin 12a	within coordinates
Rr578059	regulatory region 578059	1056 bp distal
Rr578060	regulatory region 578060	147 bp proximal
Tssr29479	transcription start site region 29479	1055 bp downstream
Tssr29480	transcription start site region 29480	1048 bp downstream
Tssr29481	transcription start site region 29481	1007 bp downstream
Tssr29482	transcription start site region 29482	980 bp downstream
Tssr29483	transcription start site region 29483	907 bp downstream
Tssr29484	transcription start site region 29484	768 bp downstream
Tssr29485	transcription start site region 29485	483 bp downstream
Tssr29486	transcription start site region 29486	461 bp downstream
Tssr29487	transcription start site region 29487	349 bp downstream
Tssr29488	transcription start site region 29488	331 bp downstream
Tssr29489	transcription start site region 29489	1275 bp upstream
Tssr29490	transcription start site region 29490	1321 bp upstream
Tssr29491	transcription start site region 29491	1612 bp upstream
Tssr29492	transcription start site region 29492	1660 bp upstream
Tssr29493	transcription start site region 29493	1677 bp upstream
Tssr33509	transcription start site region 33509	205 bp upstream