rs38060900 SNP Detail

Summary

• ID
  rs38060900
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:6168297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTCAAGGC AAACTCAGCA
  TGGGCTTCTT TGTGATTGCA TTTCCTGTGG AAGGTGGAGT GAAGCCTTGC TCAGTTGATT
  TGAGTTCTAG TATAATAGTC CTAGCAGATT CCAGTAACCA AGGCCAGCAC TTAGTGGGCT
  GTCAGAGGAT TTGACCACTC ACCTCTAGAT AAGTTCTATC CTCCTTTCAC TCCTCCTGAC
  Y
  ACTTTGTGCC CTACTCCTGG CCAGTTTCTA TAAAACCCTG GGAGACGGGA AGGGTCTGGA
  CCACCTTCAA ACTCATGCTC AGTGACAGAG CTATTTTGGC TGGGACTGTG AGCCAGGACT
  CCAGGATCCC TGTTCCCAGC CGCACTGCCC AACAACTACA CAGCCTCCCT TCCGCAGAAG
  AGCCAGACGC TGTGACGCCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50640657	NES14035621	PERLEGEN	MM_PANEL2	f	SNP	T	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38060900					SNP	T	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50640657	NES14035621	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:6168297 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21338	CpG island 21338	103 bp proximal
Pdgfd	platelet-derived growth factor, D polypeptide	287 bp upstream
Tssr2757	transcription start site region 2757	381 bp upstream
Tssr83664	transcription start site region 83664	152 bp upstream
Tssr83665	transcription start site region 83665	173 bp upstream
Tssr83666	transcription start site region 83666	256 bp upstream
Tssr83667	transcription start site region 83667	273 bp upstream
Tssr83668	transcription start site region 83668	304 bp upstream
Tssr83669	transcription start site region 83669	341 bp upstream