rs38062054 SNP Detail

Summary

• ID
  rs38062054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:64977236 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTGTCTTG TGAAGAGAAC
  TCATCAAAAC TGTACCTAAT AAAATATGAA ACTGTTAAGT CTCAACTTTA TAAATACTGA
  GACCTTTGGA GGAGTGTCCG AGCTCCCCTC CCCCGCCCAA TCCCCATGTC TTCAGGAATC
  AAAAGTATTG GCATTATCCC AGTGGAATTT TCATCACAGG TCACAACTGA TGTGCGTCAC
  R
  TTTTACACCG TGCCTGCCAG ACGGGTGCCA GACCTCTGTA GGCTTCGTGC TCCACCCAAA
  TACTTAAACC TGGTTTAGAG AAGATTCTCA GACTTGCGGG TGAGCCAAGG AAGGGCTATA
  TTTCGTTGCC CTTTTGTGAG GCAGTTGAAC TGGAAAGAGT TAATTATGGA CCTGGGGCTG
  GGTGCCTGTC CCAGAGTACG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51142162	NES13844328	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38062054					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51142162	NES13844328	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:64977236 () rs orientation: forward

Symbol	Name	Function Class
Gm31684	predicted gene, 31684	143 bp downstream
Klf3	Kruppel-like transcription factor 3 (basic)	within coordinates
Rr612115	regulatory region 612115	17 bp distal
Tssr46420	transcription start site region 46420	1062 bp upstream