rs38064298 SNP Detail

Summary

• ID
  rs38064298
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:124716457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAATATAA GCCTTTAATT
  TAAGGCTGTA TTGTTGCCTC TTGCATCAGG CCATATTTTG TAGGTGGATG GAAATCCTTT
  CGGTGATAAC CCAAGGGCTT CCCTACAGGC CCGCAAGTCT ACCATGGACA CAGAGGTTGG
  CCTTGAGACT GTACACATAT CTACATATCT GCCTGTTCAC ACTCCTAATA GTCATCTGAA
  R
  ACCTTCCTGA GGCCCAGACT GTTCGGGGCT GACCCTTCTT ACCTTTATCT CTCTTCAAGA
  ATTCCAACAA AGTCTGGATG GCAGCCACAG CTGAGGCCAT TTTAGGATCT CCTTTCATCT
  GAGACTTAAA GTATTCAATT AACTCTAAGG AGAGAGGGGG GAAAAAAAAG GATCATCACG
  TGAACTTAAC AGGAAGAGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51196601	NES13821407	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs38064298					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51196601	NES13821407	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:124716457 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16619	CpG island 16619	290 bp proximal
Eif2b1	eukaryotic translation initiation factor 2B, subunit alpha	within coordinates
Gtf2h3	general transcription factor IIH, polypeptide 3	754 bp upstream
Rr399368	regulatory region 399368	582 bp upstream
Rr620506	regulatory region 620506	259 bp proximal
Rr620507	regulatory region 620507	727 bp proximal
Rr620508	regulatory region 620508	757 bp proximal
Tssr48907	transcription start site region 48907	721 bp upstream
Tssr48908	transcription start site region 48908	740 bp upstream
Tssr53375	transcription start site region 53375	629 bp downstream
Tssr53376	transcription start site region 53376	651 bp downstream
Tssr53377	transcription start site region 53377	689 bp downstream